Index

A

add_input() (scriptcwl.workflow.WorkflowGenerator method)

add_inputs() (scriptcwl.workflow.WorkflowGenerator method) add_outputs() (scriptcwl.workflow.WorkflowGenerator method)

C

cwl_name() (in module scriptcwl.workflow)

G

get_input_names() (scriptcwl.step.Step method)

get_step() (scriptcwl.library.StepsLibrary method) get_working_dir() (scriptcwl.workflow.WorkflowGenerator method)

I

inputs() (scriptcwl.workflow.WorkflowGenerator method) iri2fragment() (in module scriptcwl.step)

is_multiline() (in module scriptcwl.yamlutils) is_url() (in module scriptcwl.scriptcwl)

L

list_inputs() (scriptcwl.step.Step method) list_steps() (scriptcwl.library.StepsLibrary method) (scriptcwl.workflow.WorkflowGenerator method) load() (scriptcwl.library.StepsLibrary method) (scriptcwl.workflow.WorkflowGenerator method)

load_cwl() (in module scriptcwl.scriptcwl) load_steps() (in module scriptcwl.library) load_yaml() (in module scriptcwl.library)

N

name_in_workflow() (in module scriptcwl.library)

O

output_reference() (scriptcwl.step.Step method)

P

PackedWorkflowException

python_name() (in module scriptcwl.step)

Q

quiet() (in module scriptcwl.scriptcwl)

R

Reference (class in scriptcwl.reference) reference_presenter() (in module scriptcwl.reference)

refers_to_step_output() (scriptcwl.reference.Reference method) refers_to_wf_input() (scriptcwl.reference.Reference method)

S

save() (scriptcwl.workflow.WorkflowGenerator method) save_yaml() (in module scriptcwl.yamlutils) scriptcwl (module) scriptcwl.examples (module) scriptcwl.examples.add (module) scriptcwl.examples.multiply (module) scriptcwl.library (module) scriptcwl.reference (module) scriptcwl.scriptcwl (module)

scriptcwl.step (module) scriptcwl.workflow (module) scriptcwl.yamlutils (module) set_documentation() (scriptcwl.workflow.WorkflowGenerator method) set_input() (scriptcwl.step.Step method) sort_loading_order() (in module scriptcwl.library) Step (class in scriptcwl.step) StepsLibrary (class in scriptcwl.library) str_presenter() (in module scriptcwl.yamlutils)

T

to_obj() (scriptcwl.step.Step method) (scriptcwl.workflow.WorkflowGenerator method)

to_script() (scriptcwl.workflow.WorkflowGenerator method)

V

validate() (scriptcwl.workflow.WorkflowGenerator method)

W

WorkflowGenerator (class in scriptcwl.workflow)